PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00059332001
Common NameGSBRNA2T00059332001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 155aa    MW: 17590.4 Da    PI: 9.1766
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00059332001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.42.5e-25958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien  nr vtfskRrng+ KKA+E+ vLCda+va+i+f+s+gk+ +y+
  GSBRNA2T00059332001  9 KRIENVNNRVVTFSKRRNGLVKKAKEITVLCDAKVALIVFASNGKMTDYC 58
                         79*********************************************997 PP

2K-box72.21.6e-2471139169
                K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                          yqk sgk+l++ak+e+l++e++k+kke+++Lq e+Rhl+Ged++sL+lk+L+ +e+++e++l k+R+++
  GSBRNA2T00059332001  71 YQKLSGKKLWDAKHENLSNEIDKIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAVEHGLDKVRDHQ 139
                          899***************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.0E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.151161IPR002100Transcription factor, MADS-box
CDDcd002651.67E-37280No hitNo description
SuperFamilySSF554557.46E-34296IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-26323IPR002100Transcription factor, MADS-box
PfamPF003197.3E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-263859IPR002100Transcription factor, MADS-box
PfamPF014864.4E-1582139IPR002487Transcription factor, K-box
PROSITE profilePS5129710.23684154IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MGRGKIEIKR IENVNNRVVT FSKRRNGLVK KAKEITVLCD AKVALIVFAS NGKMTDYCCP  60
SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDKIKKENDS LQLELRHLKG EDIQSLNLKN  120
LMAVEHAVEH GLDKVRDHQA YGVPYDKKEK CDHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A6e-16263162MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B6e-16263162MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C6e-16263162MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_D6e-16263162MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1tqe_P6e-16163163Myocyte-specific enhancer factor 2B
1tqe_Q6e-16163163Myocyte-specific enhancer factor 2B
1tqe_R6e-16163163Myocyte-specific enhancer factor 2B
1tqe_S6e-16163163Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.250981e-165flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00059332001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9679630.0KC967963.1 Brassica oleracea var. viridis PI.c (PI.c) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013736392.15e-98PREDICTED: floral homeotic protein PISTILLATA-like isoform X1
RefseqXP_013736393.15e-98PREDICTED: floral homeotic protein PISTILLATA-like isoform X2
SwissprotP480071e-97PIST_ARATH; Floral homeotic protein PISTILLATA
TrEMBLA0A078HG711e-110A0A078HG71_BRANA; BnaC09g37550D protein
STRINGBra002285.1-P1e-97(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53002751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.18e-99MIKC_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]